Web2 feb. 2016 · Molecular visualization often requires the display of surface data. The purpose of the Jmol voxel (JVXL) file format is to provide a mechanism for the efficient delivery of molecular surface data (orbitals, electron density plots, electrostatic potential maps, solvent surfaces, etc.) from a web server to a client page in a compact manner. Web17 feb. 2024 · set picking none: Inactivates the mouse pointer and button and turns picking "off.": set picking: none: set picking identify: Returns the label for an atom selected by the mouse to the browser status bar and RasMol/Chime message box (when displayed).: set picking: identify: set picking label: Displays the identifier label on the image for an atom …
The Jmol Voxel (JVXL) File Format
WebRe: [Jmol-users] Isosurface related bugs in 14.31.32 An interactive viewer for three-dimensional chemical structures. Brought to you by: aherraez , egonw , hansonr , … WebHi all, I've got an issue with Jmol that I don't really understand. I've got a simple script: load "/tmp/test.molden" mo 1 mo titleformat "%F Orbital %I Sym %S Occ %O" write IMAGE … bp921led-n
Jmol Interactive Examples - St. Olaf College
Web2 jun. 2024 · PyMOL offers three different algorithms for isosurface generation. Each of these can be activated by the isosurface_algorithm setting 0: Marching Cubes via VTKm (default) (requires VTKm) 1: Marching Cubes basic (fallback if VTKm not installed) 2: Marching tetrahedra (legacy) Examples fetch 1oky, type=2fofc, async=0 isosurface … Web7 okt. 2006 · The typical Jmol command would be isosurface molecular map MEP this would 1) create a monochromic molecular surface -- pretty much at the VDW radii. 2) create a grid based on partial charges contained in the file 3) map that grid as MEP onto the first surface. Now, you say you have the two cube data sets. Jmol, as Rasmol, uses a sphere with 1.2 Å radius for water; Chime uses 1.2 Å for dots and 1.4 Å for surfaces. Other programs/authors use 1.4 Å. The probe radius can be defined using the set radius command. Index: Surfaces based on molecule: solvent-accesible surfaces. solvent-excluded surfaces or molecular surfaces. gym ottery st mary